Hhinsch Week 11

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Bibliography Notes

  • You must use these three databases/tools to find the references that you include in your bibliography: PubMed, GoogleScholar, and Web of Science. Answer the following questions as part of your assignment:
  • Use a keyword search for the first three databases/tools and answer the following:
    • PubMed
      • What original keyword(s) did you use? How many results did you get?
        • I originally used the keywords: "yeast cold shock microarray". The search keywords produced six results.
      • Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?
        • I didn't need to narrow down the results because there were only six results from the original search.
    • Google Scholar
      • What original keyword(s) did you use? How many results did you get?
        • I originally used the keywords: "yeast cold shock microarray". I got 31,400 results.
      • Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?
        • I then used the keywords: "yeast cold shock microarray data over time". There were still over 20,000 results so I added a constraint that only showed articles published post 2017. The search narrowed down to 1,530 results.
    • Web of Science
      • What original keyword(s) did you use? How many results did you get?
        • I originally used the keywords: "yeast cold shock microarray". The search keywords produced ten results.
      • Which terms in which combinations were most useful to narrow down the search? How many results did you get after narrowing the search?
        • I didn't need to narrow down the results because there were only ten results from the original search.
  • Use the advanced search functions for each of these three databases/tools and answer the following:
    • PubMed
      • Which advanced search functions were most useful to narrow down the search? How many results did you get?
        • Again, I didn't feel like I needed to narrow down the search because there were only six results from the original search.
    • Google Scholar
      • Which advanced search functions were most useful to narrow down the search? How many results did you get?
        • I used the allintitle: Saccharomyces cerevisiae microarray cold shock response data function in order to narrow down the search. I got one result. Most of the other keywords I tried didn't satisfy a narrow search and came up with zero results, or came up with too many.
    • Web of Science
      • Which advanced search functions were most useful to narrow down the search? How many results did you get?
        • I used the (TS=(microarray AND data AND saccharomyces AND cerevisiae AND cold AND shock)) AND DOCUMENT TYPES: (Article) advanced search booleans for the Web of Science and came up with seven results. This narrowed down the topics of the articles.
    • Perform a prospective search on the following three review articles in Web of Science and answer the following:
      • Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007). Cold Response in Saccharomyces cerevisiae: New Functions for Old Mechanisms. FEMS Microbiological Reviews, 31, 327–341. doi: 10.1111/j.1574-6976.2007.00066.x
        • How many articles does this article cite?
          • This article cites 144 references.
        • How many articles cite this article?
          • 77 articles cite this article.
      • Al-Fageeh, M.B. & Smales, C.M. (2006). Control and Regulation of the Cellular Responses to Cold Shock: the Responses in Yeast and Mammalian Systems. Biochemical Journal, 397, 247–259. doi: 10.1042/BJ20060166
        • How many articles does this article cite?
          • This article cites 108 references.
        • How many articles cite this article?
          • 125 articles cite this article.
      • Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998). Cold shock and adaptation. BioEssays, 20, 49–57. doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N
        • How many articles does this article cite?
          • This article cites 76 references.
        • How many articles cite this article?
          • 258 articles cite this article.

Bibliography

Dahlquist, K. D., Fitzpatrick, B. G., Camacho, E. T., Entzminger, S. D., & Wanner, N. C. (2015). Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold Shock Response in Saccharomyces cerevisiae. Bulletin of Mathematical Biology, 77(8), 1457–1492. http://doi.org/10.1007/s11538-015-0092-6


Ando, A., Nakamura, T., Murata, Y., Takagi, H. and Shima, J. (2007), Identification and classification of genes required for tolerance to freeze–thaw stress revealed by genome-wide screening of Saccharomyces cerevisiae deletion strains. FEMS Yeast Research, 7: 244–253. doi:10.1111/j.1567-1364.2006.00162.x

Acknowledgments

  1. Dr. Dahlquist helped the QA's and Data Analysts learn what to look for and how to navigate Web of Science.
  2. I worked with Mary Balducci over text and in class in order to complete the deliverables of this assignment.
  3. I worked with my team members,Mary Balducci, Arash Lari and Nicole Kalcic on the creation of our team page.
  4. While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.Hhinsch (talk) 22:28, 13 November 2017 (PST)

References

  1. Web of Science. (2017). Retrieved November 13, 2017, from https://login.webofknowledge.com/error/Error?Error=IPError&PathInfo=%2F&RouterURL=https%3A%2F%2Fwww.webofknowledge.com%2F&Domain=.webofknowledge.com&Src=IP&Alias=WOK5
  2. LMU BioDB 2017. (2017). Week 11. Retrieved November 13, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_11
  3. PubMed. (2017). Retrieved November 13, 2017 from https://www.ncbi.nlm.nih.gov/pubmed
  4. Google Scholar. (2017). Retrieved November 13, 2017 from https://scholar.google.com/
  5. Ando, A., Nakamura, T., Murata, Y., Takagi, H. and Shima, J. (2007), Identification and classification of genes required for tolerance to freeze–thaw stress revealed by genome-wide screening of Saccharomyces cerevisiae deletion strains. FEMS Yeast Research, 7: 244–253. doi:10.1111/j.1567-1364.2006.00162.x
  6. Dahlquist, K. D., Fitzpatrick, B. G., Camacho, E. T., Entzminger, S. D., & Wanner, N. C. (2015). Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold Shock Response in Saccharomyces cerevisiae. Bulletin of Mathematical Biology, 77(8), 1457–1492. http://doi.org/10.1007/s11538-015-0092-6
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