Johnllopez Week 12

From LMU BioDB 2017
Jump to: navigation, search

Milestone 0

As performed on Thursday, this file contains the deliverable for my presentation.

Milestone 1

To achieve this milestone, I had to ensure that my PC had the following programs installed:

  1. Node.js 8.4.0 or newer
  2. Code-savvy editor such as Atom or Microsoft Visual Studio Code
  3. Web browser with developer tools (Seaver 120 uses Google Chrome)
  4. git version control software
  5. curl command

Fortunately, each of the programs were! I had Node.JS from the Week 7 assignment, atom from my Programming Lab class, and Chrome + Git were already installed on my pc! I also ran the following test on git: 

curl https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Main_Page

This returned the HTML for the page, so curl was definitely working!

Milestone 2

This was the first milestone that required collaboration with my teammates. It also required some interaction on GitHub.

You can access my GitHub with the following link: 

https://github.com/johnllopez616

Then, on Thursday in class, I talked to Blair Hamilton who created a fork of GRNSight. In addition, she added each of the coders to said fork. You can find the fork here: 

https://github.com/bhamilton18/GRNsight

Then, I created a branch called gene-database-apis. You can find it here: 

https://github.com/bhamilton18/GRNsight/tree/gene-database-apis

Milestone 3

These steps were necessary to ensure I had a working development environment. Prior to this, however, I did not use git, so I had to follow each step carefully to ensure that my environment worked.

  1. I had to git clone Blair's fork onto my computer. To do this, I had Eddie Azinge show me how. I was able to do each step on my own from that moment.
  2. I had to cd into the folder on my pc (C:\Users\John\GRNSight)
  3. I performed the following command: git checkout gene-database-apis. From here, whenever I would CD into GRNSight, it would automatically go into that branch.
  4. Finally, I performed npm install in that branch as suggested by the following link: https://github.com/dondi/GRNsight/wiki/Running-the-Applications. Then, I went to

http://localhost:5001/, and saw that GRNSight was here!

Milestone 4

For this milestone, I consulted my partner Eddie Azinge. He has written most of what we believe to be the code needed for our portion of the assignment. However, we have yet to write any sort of unit tests to see if it works. In addition, he has explained to me how his code works and what I need to do to write my function.

Acknowledgements and References

Acknowledgements

In class, I consulted Blair Hamilton and Eddie Azinge to ensure Milestones 1-3 were completed for this task. We discussed how GitHub would be set up, and Eddie helped me with the first step of Milestone 3. While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.

Johnllopez616 (talk) 23:42, 20 November 2017 (PST)

References

LMU BioDB 2017. (2017). Week 12. Retrieved November 15, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_12
GRNSight. Running the Applications. Retrieved November 20, 2017, from https://github.com/dondi/GRNsight/wiki/Running-the-Applications.


Individual Journal Entries and Assignments

Class Assignments

Class Weekly Journal Entries / Project Weekly Journal Entries

My Page

Retrieved from "https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php?title=Johnllopez_Week_12&oldid=5046"