TATK Week 15 Status Report

Project Progress

• Coding and QA assurance complete
• Gex files uploaded
• Working on final processing of GenMapp data and pathway creation
• Tauras and Alina started formatting final deliverable documents

Important Numbers and Results

• numbers of significant p-values by hour for TIGR4
  • 4hr - 1218
  • 12hr - 1902
  • 24hr - 918
  • 48hr - 129

• 333 errors resulted from GenMAPP import of TIGR4 data
  • None of the gene IDs were found in the XML file, indicating there was no accompanying code issue

Reflections

Alina

• What worked?

We were able to compare the gene IDs in excel to make sure the errors were not found in the original XML file. Since none of the IDs matched the original file, there is nothing further we could do to correct the errors.

• What didn't work?

All of the data that I worked with was used without any obstacles.

• What will I do next to fix what didn't work?

Overall, there wasn't really anything that didn't work, so I will continue to strive to work without any obstacles while completing the rest of the project.

Ajvree (talk) 20:33, 5 December 2013 (PST)

Template

Alina's User Page

Kevin's User Page

Tauras's User Page

Biological Databases Class Page

Gene Database Project

Gene Database Project Report Guidelines

Streptococcus pneumoniae

Import Export Cycle 1: tATK Export One: TIGR4 Testing Report

Import Export Cycle 2: tATK E2: TIGR4 Testing Report

Import Export Cycle 3: tATK E3: TIGR4 Testing Report

Import Export Cycle 4: tATK E4: TIGR4 Testing Report

Data Information

Project Roles:

Project Manager

Coder

GenMAPP User

Quality Assurance

• Kmeilak Week 10, Kmeilak Week 11, Kmeilak Week 12, Kmeilak Week 13
• Taur.vil Week 10, Taur.vil Week 11, Taur.vil Week 12, Taur.vil Week 13, Taur.vil Week 14, Taur.vil Week 15
• Ajvree Week 10, Ajvree Week 11, Ajvree Week 12, Ajvree Week 13, Ajvree Week 14, Ajvree Week 15