Ajvree Week 15

12/3/13

Comparing gene id's in excel:

• first search in xmlmatch:
  • searched for SP_[0-9][0-9][0-9][0-9] in uniprot file
  • got 2126 match results
  • saved to text file
• used excel to compare lists
  • to convert match id's from SP_#### to SP####, used control F (search/replace function) to replace underscore with a 'no space'
• link to instructions for excel match comparison found here: [[1]]
• NO Matches found, all results were N/A
• Excel File: ID Comparison
  • Out of all 333 Gene ID's, none were found in original XML file, so those errors cannot be fixed

Visual Representation of Data Information

• Finished in-class 12/3/13

Compilation of Counting Totals/Visual Information

• Began word document with all visual counting results in one place
• still missing information regarding comparisons to microarray data and MOD
• File: (uploaded as pdf since wiki refused to upload it as a .doc) PDF

12/5/13

Updating of Export 4 Testing Page

• Added relevant information to Tally Engine, XMLPipeDB, Row Counts, SQL, (etc) sections.
• Reformatted images and added images previously found on Export 1 page.

Links

Alina's User Page

Kevin's User Page

Tauras's User Page

Biological Databases Class Page

Gene Database Project

Gene Database Project Report Guidelines

Streptococcus pneumoniae

Import Export Cycle 1: tATK Export One: TIGR4 Testing Report

Import Export Cycle 2: tATK E2: TIGR4 Testing Report

Import Export Cycle 3: tATK E3: TIGR4 Testing Report

Import Export Cycle 4: tATK E4: TIGR4 Testing Report

Data Information

Project Roles:

Project Manager

Coder

GenMAPP User

Quality Assurance

• Kmeilak Week 10, Kmeilak Week 11, Kmeilak Week 12, Kmeilak Week 13
• Taur.vil Week 10, Taur.vil Week 11, Taur.vil Week 12, Taur.vil Week 13, Taur.vil Week 14, Taur.vil Week 15
• Ajvree Week 10, Ajvree Week 11, Ajvree Week 12, Ajvree Week 13, Ajvree Week 14, Ajvree Week 15