Data Information

corresponding data files to ID and sample excel file

1. GSM664117_14090187_control_Cy3_48_hr_Cy5 = control_Cy3_48hr_Cy5_1
2. GSM664117_14090181_control_Cy3_48_hr_Cy5 = control_Cy3_48hr_Cy5_2
3. GSM664116_14090193_control_Cy3_24_hr_Cy5 = control_Cy3_24hr_Cy5_1
4. GSM664116_14090175_24_hr_Cy3_control_Cy5 = 24hr_Cy3_control_Cy5_1
5. GSM664116_14090170_control_Cy3_24_hr_Cy5 = control_Cy3_24hr_Cy5_2
6. GSM664116_14087687_24_hr_Cy3_control_Cy5 = 24hr_Cy3_control_Cy5_2
7. GSM664115_14090191_control_Cy3_12_hr_Cy5 = control_Cy3_12hr_Cy5_1
8. GSM664115_14090185_control_Cy3_12_hr_Cy5 = control_Cy3_12hr_Cy5_2
9. GSM664115_14090180_12_hr_Cy3_control_Cy5 = 12hr_Cy3_control_Cy5_1
10. GSM664115_14090174_12_hr_Cy3_control_Cy5 = 12hr_Cy3_control_Cy5_2
11. GSM664115_14090168_12_hr_Cy3_control_Cy5 = 12hr_Cy3_control_Cy5_3
12. GSM664115_14087688_control_Cy3_12_hr_Cy5 = control_Cy3_12hr_Cy5_3
13. GSM664114_14090192_control_Cy3_4_hr_Cy5 = control_Cy3_4hr_Cy5_1
14. GSM664114_14090190_4_hr_Cy3_control_Cy5 = 4hr_Cy3_control_Cy5_1
15. GSM664114_14090188_4_hr_Cy3_control_Cy5 = 4hr_Cy3_control_Cy5_2
16. GSM664114_14090176_4_hr_Cy3_control_Cy5 = 4hr_Cy3_control_Cy5_3
17. GSM664114_14090169_control_Cy3_4_hr_Cy5 = control_Cy3_4hr_Cy5_2
18. GSM664114_14090167_control_Cy3_4_hr_Cy5 = control_Cy3_4hr_Cy5_3

all information data fold changes

"Pneumococcal biofilms compared to planktonic control at 4, 12, 24, 48 hours. 3 biological replicates each of 4 and 12 hour time points, and 2 biological replicates each of 24 and 48 hour time points. Flip dye (technical replicates) performed for 4, 12, and 24 hour time points; no technical replicate performed for 48 hour time point due to limiting material. Ratios were determined by averaging across technical and biological replicates. The following hybridizations made up each biological replicate: 14090167.tav.annot and 14090190.tav.annot (4hr biol rep 1); 14090169.tav.annot and 14090176.tav.annot (4hr biol rep 2); 14090192.tav.annot and 14090188.tav.annot (4hr biol rep 3); 14087688.tav.annot and 14090180.tav.annot (12hr biol rep 1); 14090185.tav.annot and 14090168.tav.annot (12hr biol rep 2); 14090191.tav.annot and 14090174.tav.annot (12hr biol rep 3); 14090170.tav.annot and 14090175.tav.annot (24hr biol rep 2); 14090193.tav.annot and 14087687.tav.annot (24hr biol rep 3); 14090181.tav.annot (48hr biol rep 1); 14090187.tav.annot (48hr biol rep 2)"

This excerpt from Array Express was the basis for determining which biological replicates were related to which technical replicates as seen in the data

Tree Representation:

Ajvree (talk) 10:20, 3 December 2013 (PST)

50571 error messages replaced with single space character.