TATK Week 13 Status Report

To create the compiled raw data file
- This was completed by Kevin on 11/18/13 and uploaded to the team wiki page
Properly document I-E cycle in testing report and create new export
- Done by Tauras on 19NOV2013, I-E C3 on the wiki
Work in Eclipse to modify gmbuilder for species code and to connect with website
- Done by Tauras during class on Thursday, modified gm committed to server and on personal computer
Complete Testing Report Information for I-E cycles that have been completed
- Alina finished the one that was complete by Wednesday, still have C3 which was exported Wednesday night.

Complete new I-E cycle after having worked with Dondi to link to the database and include the gene ID modification
To fix the issues with the compiled raw data file
To follow the instructions concerning the normalization of data and begin statistical tests
To test microarray data in GenMapp after the next I-E cycle is complete

1. What worked?

2. What didn't work?

I was not able to fix the issues with the compiled raw data file or begin statistical tests due to travel

3. What will I do next to fix what didn't work?

What were the week’s key accomplishments?

All three exports were completed, along with the counting from all the different programs. We were able to start analyzing the data and comparing the gene id's.

What are next week’s target accomplishments?

To start navigating through the microarray data and looking for/fixing the mistakes found in the raw data file.

What team strengths were seen this week?

We made significant progress in analyzing the microarray data and finishing the exports for TIGR4. We also completed the counting tasks using TallyEngine, XMLpipedb match, and SQL.

What team weaknesses were seen this week?

It was unfortunate that Kevin wasn't able to join us on Thursday this week, since he has been working the closest with the microarray data. More work is needed in that area, so we can begin doing statistical tests.

The key accomplishments this week were completing the last I-E cycle, modifying the gmbuilder for our website and gene IDs, and having a working microarray file which can be analyzed and then entered into GenMapp.
This upcoming week, we will run a new I-E cycle to test the changes to gmbuilder, make sure that it was successful in representing all data, and test microarray data in GenMapp after it is processed and modified.
The real weakness this week was Kevin not being present Thursday during class which would have helped get microarray data ready. Besides that everything seems to be going well although I doubt we have been working at maximum efficiency