Eyanosch Week 12
User Page: Erich Yanoschik Team Page: Oregon Trail Survivors
Downloaded the "raw" data and the "sdrf.txt" data Downloaded 36 sdrf.txt files each file holds data for a certain time point in the experiment for both the drug and control hybridized.
- Found that the experimental design did not involve dyeswaps the control was the Cy3 dye and treatments the Cy5 dye throughout the whole experiment.
- ex. -> Rx 0.5 MIC and control at time 10 with the replicate number
shorthand --> RX-0.5-10-rep1
(Treatment of the drug and control for that time sample, 10 minutes, of the first of 3 repetitions)
shorthand --> LR RX-0.5-10-rep1 (The Log Ratio of RX-0.5-10-rep1)
What we are going to do now is order the data in a way that makes sense, taking the ID and Log ratio from the .gpr files
We will use the shorthand for each ID column taken from the gpr files that corresponds with the raw data.
Worked with Kristen Sunday on finishing up the Excel spreadsheet and creating goals for future GennMAP deadlines. We then combined all files into one master data file by copying/pasting the spreadsheets into one document and uploaded it to the team's file page found here
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Eyanosch Week 12
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