Leishmania major Week 15 Status Report

Team Journal Assignment Week 15

GenMAPP users:
- Did sanity check for the p-values of both L. major and L. infantum
- Created GenMAPP criteria and colorsets
- Ran MAPPFiner and are waiting for results
  For more details on these steps refer to Vkuehn Week 15 and Kevinmcgee Week 15
QA:
Coder: Initiated Gene Database Testing Report, Edited code for species customization

Each team member should reflect on the team's progress:

What worked: We successfully looked at the results of our P-values and created the GenMAPP criteria and colorsets.
What didn't work: We are waiting for MAPPFinder to give us results.
What will I do next to fix what didn't work: If it does not work within 2 hours we will have to try it again and make sure no errors were made.

Vkuehn (talk) 11:03, 5 December 2013 (PST)

We were able to troubleshoot any problems with uploading our data into GenMAPP by going through everything step by step
We were held up at times by errors that involved us to wait long amounts of time. For instance, we need to export a new gene database, however we could not because postgress was already being used on the computer we were using. therefore, we had to wait hours for that to finish so we could export our database. We should plan ahead better so we don't have to wait like that.
I don't know what we could do to fix that other than stay on our computers we had been working on the whole time

Kevinmcgee (talk) 11:08, 5 December 2013 (PST)

Code for species customization was edited twice to ensure ease of use of microarray data in GenMapp. Gene Database Testing report was initiated and nearly completed.
Errors in the code as well as errors in the formatting of the microarray data held up the group project.
Test new species customization code, finish gene database testing report

Gleis (talk) 22:16, 6 December 2013 (PST)

We were able to run TallyEgine and postgres to figure out which IDs were in our database and how to capture them.
Our latest database customization didn't take so we had to rerun that.
We just need to re-export, then we will be able to move on to writing our report.

Lena (talk) 15:28, 7 December 2013 (PST)