Kevinmcgee Week 4
Transcription and Translation
Computer Code
cat infA-E.coli-K12.txt|sed "s/cat[at]at/<minus10box>&<\/minus10box>/g"|sed -r "s/.{17}<minus10/<\/minus35box>&/g"|sed "s/tt[gt]ac[at]<\/minus35box>/<minus35box>&/g"|sed "s/gagg/<rbs>&<\/rbs>/g"|sed "s/<\/rbs>/&\n/g"|sed "s/atg/<start_codon>&<\/start_codon>/1"|sed "s/tga/<stop_codon>&<\/stop_codon>1/"|sed "s/aaaggt..../<terminator>&<\/terminator>/g"|sed ':a;N;$!ba;s/\n//g'
Genetic Code
ttttcaccacaaga<start_codon>atg</start_codon>aatgttttcggcacatttctccccagagtgttataattgcggtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgcgtcaggtaacgcccatcgtttatctcaccgctcccttatacgttgcgcttttggtgcggcttagccgtgtgttttcggagtaatgtgccgaacctgtttgttgcgatttagcgcgcaaatc<minus35box>tttact</minus35box>tatttacagaacttcgg<minus10box>cattat</minus10box>cttgccggttcaaattacggtag<stop_codon>tga</stop_codon>1tacccca<rbs>gagg</rbs>attag<start_codon>atg</start_codon>gccaaagaagacaatat<stop_codon>tga</stop_codon>1aatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcgtagagttagaaaacggtcacgtggttactgcacacatctccggtaaaatgcgcaaaaactacatccgcatcctgacgggcgacaaagtgactgttgaactgaccccgtacgacctgagcaaaggccgcattgtcttccgtagtcgctgattgttttaccgcctgatgggcgaagagaaagaacgagta<terminator>aaaggtcggt</terminator>ttaaccggcctttttattttat
- The genetic sequence actually transcribed is as follows:
auggccaaagaagacaatattgaaatgcaaggtaccgttcttgaaacgttgcctaataccatgttccgcguag
- The amino acids translated are as follows:
M A K E D N I E M Q G T V L E T L P N T M F R V stop
Kevinmcgee (talk) 19:50, 19 September 2013 (PDT)
