Gleis Week 14

To Do List

• Identify new URL pattern??
• Finish export and upload microarray data

Status Report

• Began new export
• Used postgres and TallyEngine to ensure proper database version
• Postgres identified geneID formatting and exceptions:

Media:SQL Query ResultsandIDPattern Leishmania.PNG

• Five exceptions found- identify if relevant
• Export Status update @ 67%
• Screenshot of command prompt @ 67% of export

Media:Leishmania GDBexport status 67percent.PNG

• Export to GenMAPP finished
• Screenshot of command prompt at finish

Media:Leishmania GDBexport complete 26112013.PNG

• No errors appear to be present in export
• Tallyengine and postgres reported 8355 ORF IDs
• Access reports 8354 Ordered Locus Names
• attempted import of microarray data
• import yielded the following error:

Media:Leishmania Data import error.PNG