Vkuehn Week 15
From LMU BioDB 2013
ELECTRONIC NOTEBOOK
12/5/13
Sanity Check
- P-value less than 0.05: 5303
- P-value less that 0.01: 2130
- P-value less that 0.001: 317
- P-value less that 0.0001: 0
- Out of the 19201 T tests performed, more than 960 results had a P-value less than 0.05. Since 5303 genes passed this cut off it means that there were some significant changes.
- Keeping the "Pvalue" filter at p < 0.05, filter the "Avg_LogFC" column to show all genes with an average log fold change greater than zero. These were the ones that increased relative to control. There were 2970
- Genes with an average log fold change less than zero. These were the ones that decreased relative to control. There were: 2334
- Average log fold change of > 0.25 and p < 0.05: 2861
- Average log fold change of < -0.25 and p < 0.05: 2431
