Source Name	Characteristics [Organism]	Characteristics [strain]	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_characteristics]	Protocol REF	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Protocol REF	Protocol REF	Hybridization Name	Array Design REF	Protocol REF	Factor Value [ORGANISM]	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data File	Comment [Derived ArrayExpress FTP file]
GSM291427 2	Leishmania major	LV39	Biological replicate 1 of 4	amastigote_intracellular_1	intracellular amastigote stage, replicate 1	P-GSE10407-16	P-GSE10407-17	GSM291427 extract 2	total_RNA	P-GSE10407-7	GSM291427 LE 2	Alexa555	unknown	P-GSE10407-9	P-GSE10407-19	GSM291427	A-GEOD-6855	P-GSE10407-21	Leishmania major	GSM291427.gpr	GSM291427.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-3	GSM291427_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291427 1	Leishmania major	LV39	Biological replicate 1 of 4	promastigote_1	promastigote stage, replicate 1	P-GSE10407-16	P-GSE10407-17	GSM291427 extract 1	total_RNA	P-GSE10407-7	GSM291427 LE 1	Alexa647	unknown	P-GSE10407-9	P-GSE10407-19	GSM291427	A-GEOD-6855	P-GSE10407-21	Leishmania major	GSM291427.gpr	GSM291427.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-3	GSM291427_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291422 2	Leishmania infantum	  	Biological replicate 2 of 6  (dye-swap)	amastigote_intracellular_2	intracellular amastigote stage, replicate 2	P-GSE10407-5	P-GSE10407-6	GSM291422 extract 2	total_RNA	P-GSE10407-7	GSM291422 LE 2	Alexa555	unknown	P-GSE10407-10	P-GSE10407-11	GSM291422	A-GEOD-6855	P-GSE10407-12	Leishmania infantum	GSM291422.gpr	GSM291422.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-2	GSM291422_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291422 1	Leishmania infantum	  	Biological replicate 2 of 6  (dye-swap)	promastigote_2	promastigote stage, replicate 2	P-GSE10407-5	P-GSE10407-6	GSM291422 extract 1	total_RNA	P-GSE10407-7	GSM291422 LE 1	Alexa647	unknown	P-GSE10407-10	P-GSE10407-11	GSM291422	A-GEOD-6855	P-GSE10407-12	Leishmania infantum	GSM291422.gpr	GSM291422.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-2	GSM291422_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291421 1	Leishmania infantum	  	Biological replicate 1 of 6	promastigote_1	promastigote stage, replicate 1	P-GSE10407-5	P-GSE10407-6	GSM291421 extract 1	total_RNA	P-GSE10407-7	GSM291421 LE 1	Alexa555	unknown	P-GSE10407-8	P-GSE10407-11	GSM291421	A-GEOD-6855	P-GSE10407-14	Leishmania infantum	GSM291421.gpr	GSM291421.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-1	GSM291421_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291421 2	Leishmania infantum	  	Biological replicate 1 of 6	amastigote_intracellular_1	intracellular amastigote stage, replicate 1	P-GSE10407-5	P-GSE10407-6	GSM291421 extract 2	total_RNA	P-GSE10407-7	GSM291421 LE 2	Alexa647	unknown	P-GSE10407-8	P-GSE10407-11	GSM291421	A-GEOD-6855	P-GSE10407-14	Leishmania infantum	GSM291421.gpr	GSM291421.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-1	GSM291421_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291425 1	Leishmania infantum	  	Biological replicate 5 of 6  (dye-swap)	promastigote_5	promastigote stage, replicate 5	P-GSE10407-5	P-GSE10407-6	GSM291425 extract 1	total_RNA	P-GSE10407-7	GSM291425 LE 1	Alexa647	unknown	P-GSE10407-9	P-GSE10407-11	GSM291425	A-GEOD-6855	P-GSE10407-14	Leishmania infantum	GSM291425.gpr	GSM291425.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-2	GSM291425_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291425 2	Leishmania infantum	  	Biological replicate 5 of 6  (dye-swap)	amastigote_intracellular_5	intracellular amastigote stage, replicate 5	P-GSE10407-5	P-GSE10407-6	GSM291425 extract 2	total_RNA	P-GSE10407-7	GSM291425 LE 2	Alexa555	unknown	P-GSE10407-9	P-GSE10407-11	GSM291425	A-GEOD-6855	P-GSE10407-14	Leishmania infantum	GSM291425.gpr	GSM291425.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-2	GSM291425_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291428 2	Leishmania major	LV39	Biological replicate 2 of 4  (dye-swap)	amastigote_intracellular_2	intracellular amastigote stage, replicate 2	P-GSE10407-16	P-GSE10407-17	GSM291428 extract 2	total_RNA	P-GSE10407-7	GSM291428 LE 2	Alexa647	unknown	P-GSE10407-18	P-GSE10407-19	GSM291428	A-GEOD-6855	P-GSE10407-13	Leishmania major	GSM291428.gpr	GSM291428.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-4	GSM291428_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291428 1	Leishmania major	LV39	Biological replicate 2 of 4  (dye-swap)	promastigote_2	promastigote stage, replicate 2	P-GSE10407-16	P-GSE10407-17	GSM291428 extract 1	total_RNA	P-GSE10407-7	GSM291428 LE 1	Alexa555	unknown	P-GSE10407-18	P-GSE10407-19	GSM291428	A-GEOD-6855	P-GSE10407-13	Leishmania major	GSM291428.gpr	GSM291428.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-4	GSM291428_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291423 1	Leishmania infantum	  	Biological replicate 3 of 6	promastigote_3	promastigote stage, replicate 3	P-GSE10407-5	P-GSE10407-6	GSM291423 extract 1	total_RNA	P-GSE10407-7	GSM291423 LE 1	Alexa555	unknown	P-GSE10407-10	P-GSE10407-11	GSM291423	A-GEOD-6855	P-GSE10407-14	Leishmania infantum	GSM291423.gpr	GSM291423.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-1	GSM291423_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291423 2	Leishmania infantum	  	Biological replicate 3 of 6	amastigote_intracellular_3	intracellular amastigote stage, replicate 3	P-GSE10407-5	P-GSE10407-6	GSM291423 extract 2	total_RNA	P-GSE10407-7	GSM291423 LE 2	Alexa647	unknown	P-GSE10407-10	P-GSE10407-11	GSM291423	A-GEOD-6855	P-GSE10407-14	Leishmania infantum	GSM291423.gpr	GSM291423.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-1	GSM291423_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291430 1	Leishmania major	LV39	Biological replicate 4 of 4  (dye-swap)	promastigote_4	promastigote stage, replicate 4	P-GSE10407-16	P-GSE10407-17	GSM291430 extract 1	total_RNA	P-GSE10407-7	GSM291430 LE 1	Alexa555	unknown	P-GSE10407-18	P-GSE10407-19	GSM291430	A-GEOD-6855	P-GSE10407-20	Leishmania major	GSM291430.gpr	GSM291430.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-4	GSM291430_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291430 2	Leishmania major	LV39	Biological replicate 4 of 4  (dye-swap)	amastigote_intracellular_4	intracellular amastigote stage, replicate 4	P-GSE10407-16	P-GSE10407-17	GSM291430 extract 2	total_RNA	P-GSE10407-7	GSM291430 LE 2	Alexa647	unknown	P-GSE10407-18	P-GSE10407-19	GSM291430	A-GEOD-6855	P-GSE10407-20	Leishmania major	GSM291430.gpr	GSM291430.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-4	GSM291430_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291424 1	Leishmania infantum	  	Biological replicate 4 of 6  (dye-swap)	promastigote_4	promastigote stage, replicate 4	P-GSE10407-5	P-GSE10407-6	GSM291424 extract 1	total_RNA	P-GSE10407-7	GSM291424 LE 1	Alexa647	unknown	P-GSE10407-8	P-GSE10407-11	GSM291424	A-GEOD-6855	P-GSE10407-12	Leishmania infantum	GSM291424.gpr	GSM291424.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-2	GSM291424_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291424 2	Leishmania infantum	  	Biological replicate 4 of 6  (dye-swap)	amastigote_intracellular_4	intracellular amastigote stage, replicate 4	P-GSE10407-5	P-GSE10407-6	GSM291424 extract 2	total_RNA	P-GSE10407-7	GSM291424 LE 2	Alexa555	unknown	P-GSE10407-8	P-GSE10407-11	GSM291424	A-GEOD-6855	P-GSE10407-12	Leishmania infantum	GSM291424.gpr	GSM291424.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-2	GSM291424_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291426 2	Leishmania infantum	  	Biological replicate 6 of 6	amastigote_intracellular_6	intracellular amastigote stage, replicate 6	P-GSE10407-5	P-GSE10407-6	GSM291426 extract 2	total_RNA	P-GSE10407-7	GSM291426 LE 2	Alexa647	unknown	P-GSE10407-9	P-GSE10407-11	GSM291426	A-GEOD-6855	P-GSE10407-14	Leishmania infantum	GSM291426.gpr	GSM291426.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-1	GSM291426_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291426 1	Leishmania infantum	  	Biological replicate 6 of 6	promastigote_6	promastigote stage, replicate 6	P-GSE10407-5	P-GSE10407-6	GSM291426 extract 1	total_RNA	P-GSE10407-7	GSM291426 LE 1	Alexa555	unknown	P-GSE10407-9	P-GSE10407-11	GSM291426	A-GEOD-6855	P-GSE10407-14	Leishmania infantum	GSM291426.gpr	GSM291426.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-1	GSM291426_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291429 1	Leishmania major	LV39	Biological replicate 3 of 4	promastigote_3	promastigote stage, replicate 3	P-GSE10407-16	P-GSE10407-17	GSM291429 extract 1	total_RNA	P-GSE10407-7	GSM291429 LE 1	Alexa647	unknown	P-GSE10407-9	P-GSE10407-19	GSM291429	A-GEOD-6855	P-GSE10407-21	Leishmania major	GSM291429.gpr	GSM291429.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-3	GSM291429_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip
GSM291429 2	Leishmania major	LV39	Biological replicate 3 of 4	amastigote_intracellular_3	intracellular amastigote stage, replicate 3	P-GSE10407-16	P-GSE10407-17	GSM291429 extract 2	total_RNA	P-GSE10407-7	GSM291429 LE 2	Alexa555	unknown	P-GSE10407-9	P-GSE10407-19	GSM291429	A-GEOD-6855	P-GSE10407-21	Leishmania major	GSM291429.gpr	GSM291429.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.raw.1.zip	P-GSE10407-3	GSM291429_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-10407/E-GEOD-10407.processed.1.zip