Publications
Dahlquist KD, Alphonso A, Smith D, Villaflores C, Dionisio JDN. “XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources.” 10th annual Bioinformatics Open Source Conference (BOSC 2009). Stockholm, Sweden, June 27–28, 2009.
Dionisio JDN, Dahlquist KD. “Improving the computer science in bioinformatics through an open source pedagogy.” First RECOMB Satellite Conference on Bioinformatics Education, March 2009.
Alphonso A, Villaflores C, Smith D, Dahlquist KD, Dionisio JDN. “Extending XMLPipeDB to create gene databases for plants and microorganisms for the analysis of DNA microarray data.” First RECOMB Satellite Conference on Bioinformatics Education, March 2009.
Dahlquist KD, Dionisio JDN. “Fostering interdisciplinary teamwork in an undergraduate biological databases course.” First RECOMB Satellite Conference on Bioinformatics Education, March 2009.
Dionisio JDN, Dahlquist KD. “Improving the computer science in bioinformatics through open source pedagogy.” ACM SIGCSE Bulletin 40(2):115-119, June 2008. http://doi.acm.org/10.1145/1383602.1383648
Dahlquist KD, Dionisio JDN. “An Open Source Framework for Teaching Bioinformatics.” 8th annual Bioinformatics Open Source Conference (BOSC 2007). Vienna, Austria, July 19–20, 2007.
- Online presentation slides (Hosted by SlideShare)
Dahlquist KD, Nicholas J, Dionisio JDN. “XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources.” 8th annual Bioinformatics Open Source Conference (BOSC 2007). Vienna, Austria, July 19–20, 2007.
- Online presentation slides (Hosted by SlideShare)
Dahlquist KD, Dionisio JDN. “Collaborating Early and Often: Bringing Biology and Computer Science Together Through an Open Source Culture.” LMU Junior Faculty Seminar. Loyola Marymount University, November 14, 2006.
- Presentation slides: 4.7M PDF
Dahlquist KD, Dionisio JDN. “A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources.” 7th annual Bioinformatics Open Source Conference (BOSC 2006). Fortaleza, Brazil, August 5, 2006.
- Presentation slides: 3.6M PDF
Dahlquist KD, Barrett J, Boyle J, Carasso A, Hoffman D, Naffas B, Nicholas J, Ruiz R, Spicer S, Dionisio JDN. “A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources.” 14th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2006). Fortaleza, Brazil, August 6–10, 2006.
- Poster abstract (ISMB site)
- Poster download: 1.7M PDF