A Project of the LMU Bioinformatics Group
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XMLPipeDB

A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources

Download

Regular GenMAPP users can go straight to downloading Gene Databases for their species of interest. Software developers in bioinformatics (or other areas) that wish to automate the creation of relational databases from XML sources will be interested in the releases available from SourceForge.

Source Code and Full XMLPipeDB Suite

Source code and executable packages are available from the XMLPipeDB project site on SourceForge:

Technical documentation is also available:

Gene Databases

GenMAPP Gene Database for Arabidopsis thaliana

GenMAPP Gene Database for Escherichia coli K12

GenMAPP Gene Database for Helicobacter pylori str. 26695

GenMAPP Gene Database for Mycobacterium smegmatis ATCC 700084/mc(2)155

GenMAPP Gene Database for Mycobacterium tuberculosis ATCC 25618/H37Rv

GenMAPP Gene Database for Plasmodium falciparum (isolate 3D7)

GenMAPP Gene Database for Pseudomonas aeruginosa str. PAO1

GenMAPP Gene Database for Salmonella typhimurium ATCC 700720/SGSC1412/LT2

GenMAPP Gene Database for Staphylococcus aureus (strain MRSA252)

GenMAPP Gene Database for Vibrio cholerae O1 biovar El Tor str. N16961 Gene Database

System Requirements

Recommended Hardware

Gene Databases

GenMAPP Builder

XSD-to-DB

XMLPipeDB Utilities

Database Libraries (UniProtDB, GODB)